• 中国中文核心期刊
  • 中国科学引文数据库(CSCD)核心库来源期刊
  • 中国科技论文统计源期刊(CJCR)
  • 第二届国家期刊奖提名奖

留言板

尊敬的读者、作者、审稿人, 关于本刊的投稿、审稿、编辑和出版的任何问题, 您可以本页添加留言。我们将尽快给您答复。谢谢您的支持!

姓名
邮箱
手机号码
标题
留言内容
验证码

红松4个组织的转录组数据分析与次生代谢产物的表达差异初探

张振 张含国 周宇 张磊 于宏影 张莉

引用本文:
Citation:

红松4个组织的转录组数据分析与次生代谢产物的表达差异初探

  • 基金项目:

    林业公益性行业科研专项"红松果材兼用林良种选育与定向培育技术研究"(201204320)

  • 中图分类号: S791.245

Differential Gene Expression Analysis on Secondary Metabolites and Transcriptome Sequencing to Four Tissues of Pinus koraiensis

  • CLC number: S791.245

  • [1] 马建路,庄丽文,陈 动,等.红松的地理分布[J].东北林业大学学报,1992,20(5):40-47.

    [2]

    Wolff R L, Pedrono F, Pasquier E, et al. General characteristics of Pinus spp. seed fatty acid compositions, and importance of Delta 5-olefinic acids in the taxonomy and phylogeny of the genus[J]. Lipids ,2000,35: 1-22.
    [3]

    Yoon T H, Im K J, Koh ET, et al. Fatty-Acid Compositions of Pinus Koraiensis Seed[J]. Nutr Res 1989,9:357-361.
    [4]

    Nergiz C, Donmez I. Chemical composition and nutritive value of Pinus pinea L. seed [J]. Food Chem, 2004,86: 365-368.
    [5]

    Zadernowski R, Naczk M, Czaplicki S. Chemical composition of Pinus sibirica nut oils[J]. Eur J Lipid Sci Tech, 2009,111: 698-704.
    [6]

    Li Y, Sun C, Luo H M, et al. Transcriptome characterization for Salvia using 454 GS FLX[J]. Yao xue xue bao, 2010,45(4): 524-529.
    [7]

    Adams M.D, Kelley J M. Gocayne J D, et al. Complementary DNA sequencing: expressed sequence tags and human genome project[J]. Science, 1991,5013: 1651-1656.
    [8]

    Boguski M S, Tolstoshev C M, Bassett D E. Gene discovery in dbEST[J]. Science, 1994, 265(5181): 1993-1994.
    [9]

    Bouchez D, Höfte H. Functional genomics in plants[J]. Plant Physiol, 1998, 118(3): 725-732.
    [10]

    Allona I, Quinn M, Shoop E, et al. Analysis of xylem formation in pine by cDNA sequencing, Proc[J]. Natl. Acad. Sci., USA, 1998, 95(16): 9693-9698.
    [11]

    Chagn D, Chaumeil P, Ramboer A, et al. Cross-species transferability and mapping of genomic and cDNA SSRs in pines[J]. Theor. Appl. Genet, 2004, 109(6): 1204-1214.
    [12]

    Temesgen B, Brown G R, Harry D E, et al. Genetic mapping of expressed sequence tag polymorphism (ESTP) markers in loblolly pine (pinus taeda L.) [J]. Theor. Appl. Genet., 2001, 102(5): 664-675.
    [13]

    Manfred G G, Brian J H, Moran Y, et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome[J]. Nature Biotechnology, 2011 (29): 644-652.
    [14]

    Stephen F A, Thomas L M, Alejandro A S, et al. Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs[J]. Nucleic Acids Res, 1997 25(17): 3389-3345.
    [15]

    Yangyang DENG, Jianqi LI, Songfeng WU, et al. Integrated nr Database in Protein Annotation System and Its Localization[J]. Computer Engineering, 2006 32(5):71-74.
    [16]

    Michael A, Catherine A B, Judith A B, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium[J]. Nat Genet, (25): 25-29.
    [17]

    Roman L T, Michael Y G, Darren A N, et al. The COG database: a tool for genome-scale analysis of protein functions and evolution[J]. Nucleic Acids Res, 2000,128(1):33-36.
    [18]

    Minoru K, Susumu G, Shuichi K, et al. The KEGG resource for deciphering the genome[J]. Nucleic Acids Res, 2004, (32):277-280.
    [19]

    Bo Li, Colin N D. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome[J]. BMC Bioinformatics, 2011, 12:323-326.
    [20]

    Ali M, Brian A W, Kenneth M, et al. Mapping and quantifying mammalian transcriptomes by RNA-Seq[J]. Nature methods, 2008 (5): 621-628.
    [21]

    Ning L, John A D, James A T, et al. EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments[J]. Bioinformatics, 2013 (29): 1035-1043.
    [22] 龚 治,李典谟,张 真,针叶树萜类合成酶基因研究进展[J].林业科学,2010,46(1):123-130.

    [23] 申培林,杨铁刹,张小全,等.烟草类萜类生物合成途径中关键酶基因的克隆与表达调控[J].江苏农业科学,2012,40(1): 37-40.

    [24]

    Pavy N, Laroche J, Bousque J, et al. Large-scale statistical analysis of secondary xylem ESTs in pine[J]. Plant Molecular Biology, 2005, 57:203-224.
    [25]

    Li C,Zhu Y,Guo X. et al. Transcriptome analysis reveals ginsenosides biosynthetic genes, microRNAs and simple sequence repeats in Panax ginseng C. A. Meyer[J]. BMC Genomics,2013, 14:245-256.
    [26] 李铁柱,杜红岩,刘慧敏,等.杜仲果实和叶片转录组数据组装及基因功能注释[J].中南林业大学学报,2012,32(11):122-130.

    [27]

    Jun Chen, Severin U, Niclas G, et al. Sequencing of the needle transcriptome from Norway spruce (Picea abiesKarst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms[J]. BMC Genomics2012, 13:589-604.
    [28]

    Dawn E H, Macaire M S Y, Sharon J, et al. Transcriptome resources and functional characterization of monoterpene synthases for two host species of the mountain pine beetle, lodgepole pine (Pinus contorta) and jack pine (Pinus banksiana)[J].BMC Plant Biology,2013,13:80-94.
    [29]

    Shi-Hui Niu, Zhe-Xin Li, Hu-Wei Yuan, et al. Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny[J]. BMC Genomics2013, 14:263-275.
    [30] 王晓锋,何卫龙,蔡卫佳,等.马尾松转录组测序和分析[J].分子植物育种,2013,11(3):385-392.

    [31] 王振宇,牛之瑞.红松种仁不饱和脂肪酸研究进展[J].油脂工程,2007,2:58-61.

    [32] 张 振,张 磊,张含国,等.铁力红松种子园无性系种子形态及营养成分变异研究[J].植物研究,2014,34(3): 356-363.

    [33]

    Jones A, Davies H M, Voelker T A. Palmitoyl-acyl carrier protein (ACP) thioesterase and the evolutionary origin of plant acyl-ACP thioesterases [J]. Plant Cell, 1995, 7: 359-371.
    [34]

    Wu P Z, Li J, Wei Q, et al. Cloning and functional characterization of an acyl-acyl carrier protein thioesterase(JcFatB1) from Jatrophacurcas [J]. Tree Physiol, 2009, 29: 1299-1305.
    [35]

    Luo T, Peng S M, Deng W Y, et al. Characterization of a new stearoyl-acyl carrier protein desaturase gene from Jatropha curcas[J]. Biotechnology Letters,2006,28: 657-662.
    [36]

    Slocombe S P, Cummins I, Jarvis R P, et al. Nucleotide sequence and temporal regulation of a seed-specific Brassica napus cDNA encoding a stearoyl-acyl carrier protein(ACP) desaturase[J]. Plant Mol Biol,1992,20: 151-155.
    [37] 黄 瑛,曾庆平.2006. 萜类生物合成的基因操作[J].中国生物工程杂志, 26(1): 60-64.

  • [1] 杜明凤丁贵杰 . 基于马尾松干旱转录组的抗旱功能SSR位点分析. 林业科学研究, 2018, 31(5): 9-19. doi: 10.13275/j.cnki.lykxyj.2018.05.002
    [2] 邓楠史胜青常二梅刘建锋兰倩江泽平 . 基于中麻黄萌发种子转录组的黄酮类化合物合成途径基因的挖掘. 林业科学研究, 2014, 27(6): 758-763.
    [3] 郭晋敏杨升刘星王金旺王文卿陈秋夏 . 秋茄低温胁迫转录组分析及脱落酸信号途径基因挖掘. 林业科学研究, 2023, 36(2): 39-49. doi: 10.12403/j.1001-1498.20220417
    [4] 马婧邓楠褚建民纪敬史胜青江泽平成铁龙 . 泡泡刺高通量转录组鉴定及其黄酮类代谢途径初步分析. 林业科学研究, 2016, 29(1): 61-66.
    [5] 田林尹丹丹成铁龙夏新莉尹伟伦 . 盐胁迫下比拉底白刺差异表达基因的转录组分析. 林业科学研究, 2020, 33(1): 1-10. doi: 10.13275/j.cnki.lykxyj.2020.01.001
    [6] 刘奇峰陈东升冯健高慧淋 . 辽东山区人工红松冠长率影响因子研究. 林业科学研究, 2022, 35(6): 127-134. doi: 10.13275/j.cnki.lykxyj.2022.006.014
    [7] 蒋路平王景源张鹏梁德洋张秦徽王碧莹裴晓娜赵曦阳 . 170个红松无性系生长及结实性状变异及选择. 林业科学研究, 2019, 32(1): 58-64. doi: 10.13275/j.cnki.lykxyj.2019.01.008
    [8] 王帅邵芬娟李论芦强邱德有 . 穗花杉的转录组测序及其转录组特性分析. 林业科学研究, 2017, 30(5): 759-764. doi: 10.13275/j.cnki.lykxyj.2017.05.008
    [9] 周婧李卓蓉吴江婷 . 不同氮形态处理条件下杨树根尖差异表达基因的特征分析. 林业科学研究, 2022, 35(2): 45-55. doi: 10.13275/j.cnki.lykxyj.2022.02.006
    [10] 饶龙兵杨汉波郭洪英段红平陈益泰 . 基于桤木属转录组测序的SSR分子标记的开发. 林业科学研究, 2016, 29(6): 875-882.
    [11] 郝心怡王哲舒范志斌王丽娟 . 杨树响应腐皮镰刀菌侵染的转录组学分析. 林业科学研究, 2024, 37(): 1-13. doi: 10.12403/j.1001-1498.20230458
    [12] 李珊珊曾艳飞何彩云张建国 . 基于沙棘转录组序列开发EST-SSR分子标记. 林业科学研究, 2017, 30(1): 69-74. doi: 10.13275/j.cnki.lykxyj.2017.01.0010
    [13] 李太强刘雄芳万友名李正红李钰莹刘秀贤马宏 . 滇东南濒危植物长梗杜鹃转录组微卫星特征分析. 林业科学研究, 2017, 30(4): 533-541. doi: 10.13275/j.cnki.lykxyj.2017.04.001
    [14] 刘宇徐焕文刘桂丰姜静 . 赤霉素GA4+7处理下白桦无性系生长及差异基因表达分析. 林业科学研究, 2017, 30(1): 181-189. doi: 10.13275/j.cnki.lykxyj.2017.01.025
    [15] 刘雄芳李太强李正红万友名刘秀贤张序安静马宏 . 云南干热河谷地区余甘子转录组分析. 林业科学研究, 2018, 31(5): 1-8. doi: 10.13275/j.cnki.lykxyj.2018.05.001
    [16] 刘丽婷温强黄小春刘琪璟 . 蕨类植物芒萁幼孢子体转录组高通量测序及特征分析. 林业科学研究, 2016, 29(4): 500-507.
    [17] 封润霞赵婕张苏芳王建军魏建荣刘建凤 . 绒毛白蜡(Fraxinus velutina Torr)韧皮部响应白蜡窄吉丁(Agrilus planipennis Fairmaire)危害的转录组变化. 林业科学研究, 2021, 34(1): 47-55. doi: 10.13275/j.cnki.lykxyj.2021.01.006
    [18] 于淑惠亓倩孙涛王雪庆杨璞冯颖 . 白蜡虫雄虫真蛹转录组分析. 林业科学研究, 2016, 29(3): 413-417.
    [19] 陈沫何沙娥陈少雄欧阳林男张程张维耀 . 基于转录水平解析尾巨桉径向生长对种植密度的响应. 林业科学研究, 2021, 34(5): 1-12. doi: 10.13275/j.cnki.lykxyj.2021.005.001
    [20] 刘文汝冀胜鑫甄志先 . 感染国槐带化病植株内源激素及转录组分析. 林业科学研究, 2022, 35(1): 141-149. doi: 10.13275/j.cnki.lykxyj.2022.01.016
  • 加载中
计量
  • 文章访问数:  3272
  • HTML全文浏览量:  416
  • PDF下载量:  1375
  • 被引次数: 0
出版历程
  • 收稿日期:  2013-10-17

红松4个组织的转录组数据分析与次生代谢产物的表达差异初探

  • 1. 东北林业大学 林木遗传育种国家重点实验室, 黑龙江 哈尔滨 150040
基金项目:  林业公益性行业科研专项"红松果材兼用林良种选育与定向培育技术研究"(201204320)

English Abstract

参考文献 (37)

目录

    /

    返回文章
    返回