Transferability of S-RNase Genotype Identification Primers from Rosaceae to Kernel-apricot

LIU Meng-pei; WUYUN Tana; ZHU Gao-pu; ZHAO Han; DU Hong-yan

Volume 27 Issue 6

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Transferability of S-RNase Genotype Identification Primers from Rosaceae to Kernel-apricot

1.
Non-timber Forestry Research and Development Center, Chinese Academy of Forestry, China Paulownia Research and Development Center, Zhengzhou 450003, He'nan, China

Received Date: 2014-02-08

Abstract

The transferability of 53 pairs of self-incompatible S-RNase genotype identification primers from Rosaceae to kernel-apricot was analyzed in order to provide theoretical reference for S-RNase genotype identification and cross breeding work of kernel-apricot. The results showed that only 12 out of 53 primers had good transferability in kernel-apricot which could be used in S-RNase genotype identification. There was a higher transferability in kernel-apricot of Prunoideae than Maloideae, but the highest was in Armeniaca.
- Rosaceae,
- S-RNase genes,
- kernel-apricot

References

[1]	李淑芳,陈晓明, 郭意如.杏仁的营养成分与功能因子[J].农产品加工,2001,11(4):23-24.
[2]	王淑英,温哲屹,李慧颖.我国甜杏仁营养成分含量分析[J].北京农业,2008,9:13-16.
[3]	李科友,史清华,朱海兰.苦杏仁主要营养成分的研究[J].西北农业学报,2003,12(2):119-121.
[4]	朱文娴.防癌治癌佳品杏仁[J].烹调知识,2004,12(4):10-12.
[5]	张加延.试论仁用杏产业化发展的几个问题[J].中国果树,2001,3:46-48.
[6]	白岗栓,杜社妮,侯喜录.白于山区仁用杏生长状况与评价[J].林业科学, 2004,40(6):185-189.
[7]	侯智霞,翟明普,蔡秀芝,等.我国仁用杏生产现状分析[J].北方园艺,2008,2:39-41.
[8]	Mccluer B A, Haring V, Ebert P R. Style self-incompatibility gene products of Nicotiana alata are ribonucleases [J]. Nature, 1989, 342: 955-957.
[9]	Sassa H, Hirano H, Ikehashi H. Self-incompatibility-related RNase in styles of Japanese pear (Pyrus serotina Rehd)[J]. Plant Cell Physiol, 1992, 33: 811-814.
[10]	Ushijima K, Sassa H, Dandekar A M, et al. Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expression F-box gene with haplotype-specific polymorphism [J]. Plant Cell, 2003, 15: 771-781.
[11]	Yamane H, Ikeda K, Ushijima K, et al. A pollen-expressed gene for a novel protein with an F-box motif that is very tightly linked to a gene for S-RNase in two species of cherry, Prunus cerasus and P. avium [J]. Plant Cell Physiol, 2003, 44: 764-769.
[12]	Cheng J H, Bai S L, Han Z H, et al. Cloning and expression qnalysis of the self-incompatibility 9-Haplotype specific F-box genes in cherry (Prunus Avium)[J]. Scientia Agricultura Sinica, 2006, 39 (5): 976-983.
[13]	Entani T, Iwano M, Shuba H, et al. Comparative analysis of the self -incompatibility(S-)locus region of Prunus mume: Identification of a pollen-expressed F-box gene with allelic diversity [J]. Genes Cells, 2003, 8: 203-213.
[14]	刘月霞,冯建荣,王大江,等.2个中亚杏品种自交不亲和SFB 基因的克隆及序列分析[J].果树学报,2013,30(4):551-557.
[15]	Xu J X, Gao Z H, Zhang Z. Identification of S-genotypes and novel S-RNase alleles in Japanese apricot cultivars native to China [J]. Scientia Horticulturae, 2010, 123: 459-463.
[16]	吴俊,谷超,张绍铃,等.11个中国杏品种S-RNase基因的检测与序列分析[J].南京农业大学学报,2008,1(4):37-42.
[17]	冯建荣,陈学森,吴燕.凯特与新世纪杏自交不亲和S-RNase 基因的检测及克隆[J].林业科学,2006,42(10):129-132.
[18]	Zhang L, Chen X, Chen X, et al. Identification of self-incompatibility (S-) genotypes of Chinese apricot cultivars [J]. Euphytica, 2008, 160: 241-248.
[19]	Yamane H, Ushijima K, Sassa H, et al. The use of the S haplotype-specific F-box protein gene, SFB, as a molecular marker for S-haplotypes and self-compatibility in Japanese apricot (Prunus mume) [J]. Theor Appl Genet, 2003, 107: 1357-1361.
[20]	张立杰.中国杏品种S基因型的鉴定.泰安:山东农业大学,2007.
[21]	姜新,曹晓艳,王大江,等.南疆杏品种自交不亲和S-RNase 基因型的鉴定[J].果树学报,2012,29(4):569-576.
[22]	李洪果.李、杏、杏李S基因型确定及其在种间杂交亲本选择中的应用.长沙:中南林业科技大学,2010.
[23]	Halász J, Hegedûs A, Hermán R', et al. New self-incompatibility alleles in apricot (Prunus armeniaca L.) revealed by stylar ribonuclease assay and & PCR analysis [J]. Euphytica, 2005,145: 57-66.
[24]	Xu J X, Gao Z H, Zhang Z. Identification of S-genotypes and novel S-RNase alleles in Japanese apricot cultivars native to China [J]. Scientia Horticulturae, 2010, 123: 459-463.
[25]	Banovic'B, Šurbanovski N, Konstantinovic'M, et al. Basic RNases of wild almond (Prunus webbii): Cloning and characterization of six new S-RNase and one''non-S RNase''genes [J]. Journal of Plant Physiology, 2009, 166: 395-402.
[26]	齐洁,顾曼如,束怀瑞.杏自交不亲和相关S-Rnase基因的克隆及表达[J].农业生物技术学报,2003,11(1):148-153.
[27]	Sutherland BG, Robbins T P, Tobutt K R. Primer samplifying a range of Prunus S-alleles [J]. Plant Breed, 2004, 123: 582-584.
[28]	Sapir G, Stern R A, Shafir S, et al. S-RNase based S-genotyping of Japanese plum (Prunus salicina Lindl.) and its implication on the assortment of cultivar-couples in the orchard [J]. Scientia Horticulturae, 2008, 118: 8-13.
[29]	Gu C, Wu J, Zhang S J, et al. Characterization of the S-RNase genomic DNA allele sequence in Prunus speciosa and P. pseudocerasus [J]. Scientia Horticulturae, 2012, 144: 93-101.
[30]	Yamane H, Tao R, Mori H, et al. Identification of a non-S RNase, a possible ancestral form of S-RNases, in Prunus [J]. Mol Genet Genomics, 2003, 269: 90-100.
[31]	Matsumoto S, Kitahara K. Discovery of a new self-incompatibility allele in apple [J]. HortScience, 2000, 35 (7): 1329-1332.
[32]	Cheng J, Hall Z, Xu X, et al. Isolation an d identification of the pollen expressed polymorphic F-box genes linked to the S-locus in apple (Malus×domestica) [J]. Sexual Plant Reproduction, 2006, 19: 175-183.
[33]	Broothaerts W. New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles [J]. Theoretical and Applied Genetics, 2003, 106 (4): 703-714.
[34]	Ishimizu T, Inoue K, Shimonaka M, et al. PCR-based method for identifying the S-genotypes of Japanese pear cultivars [J]. Theoretical and App lied Genetics, 1999, 98: 961-967..
[35]	梁文杰,谭晓风,张琳,等.8个中国梨品种基因型的分子鉴定[J].果树学报,2007,24(6):757-760.
[36]	Gu Q Q, Zhang Q L, Hu H J, et al. Identification of Self-Incompatibility Genotypes in Some Sand Pears (Pyrus pyrifolia Nakai) by PCR-RFLP Analysis[J]. Agricultural Sciences in China, 2009, 8(2): 154-160.
[37]	乌云塔娜,李洪果,杜红岩,等.中国李、杏S基因鉴定及其在远缘杂交中的应用(I)—中国杏地方品种9个新S基因的鉴定[J].中南林业科技大学学报,2011,31(4):90-96.
[38]	张绍铃,吴巨友,吴俊,等.蔷薇科果树自交不亲和性分子机制研究进展[J].南京农业大学学报,2012,35(5):53-63.
[39]	Yaegaki H, Shimada T, Moriguchi T, et al. Molecular characterization of S-RNase genes and S-genotypes in the Japanese apricot (Prunus mume Sieb. et Zucc.) [J]. Sex Plant Reprod, 2001,13 (5): 251-257.
[40]	Wünsch A, Hormaza J. Genetic and molecular analysis in Cristobalina sweet cherry, a spontaneous self-compatible mutant [J]. Sex Plant Reprod, 2004, 17(4): 203-210.
[41]	Ushijima K, Sassa H, Dandekar A M, et al. Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism [J]. Plant Cell, 2003, 15(3): 771-781.

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通讯作者: 陈斌, bchen63@163.com

1.
沈阳化工大学材料科学与工程学院沈阳 110142

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Transferability of S-RNase Genotype Identification Primers from Rosaceae to Kernel-apricot

1. Non-timber Forestry Research and Development Center, Chinese Academy of Forestry, China Paulownia Research and Development Center, Zhengzhou 450003, He'nan, China

Received Date: 2014-02-08

Abstract: The transferability of 53 pairs of self-incompatible S-RNase genotype identification primers from Rosaceae to kernel-apricot was analyzed in order to provide theoretical reference for S-RNase genotype identification and cross breeding work of kernel-apricot. The results showed that only 12 out of 53 primers had good transferability in kernel-apricot which could be used in S-RNase genotype identification. There was a higher transferability in kernel-apricot of Prunoideae than Maloideae, but the highest was in Armeniaca.

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Reference (41)

[1]	李淑芳,陈晓明, 郭意如.杏仁的营养成分与功能因子[J].农产品加工,2001,11(4):23-24.
[2]	王淑英,温哲屹,李慧颖.我国甜杏仁营养成分含量分析[J].北京农业,2008,9:13-16.
[3]	李科友,史清华,朱海兰.苦杏仁主要营养成分的研究[J].西北农业学报,2003,12(2):119-121.
[4]	朱文娴.防癌治癌佳品杏仁[J].烹调知识,2004,12(4):10-12.
[5]	张加延.试论仁用杏产业化发展的几个问题[J].中国果树,2001,3:46-48.
[6]	白岗栓,杜社妮,侯喜录.白于山区仁用杏生长状况与评价[J].林业科学, 2004,40(6):185-189.
[7]	侯智霞,翟明普,蔡秀芝,等.我国仁用杏生产现状分析[J].北方园艺,2008,2:39-41.
[8]	Mccluer B A, Haring V, Ebert P R. Style self-incompatibility gene products of Nicotiana alata are ribonucleases [J]. Nature, 1989, 342: 955-957.
[9]	Sassa H, Hirano H, Ikehashi H. Self-incompatibility-related RNase in styles of Japanese pear (Pyrus serotina Rehd)[J]. Plant Cell Physiol, 1992, 33: 811-814.
[10]	Ushijima K, Sassa H, Dandekar A M, et al. Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expression F-box gene with haplotype-specific polymorphism [J]. Plant Cell, 2003, 15: 771-781.
[11]	Yamane H, Ikeda K, Ushijima K, et al. A pollen-expressed gene for a novel protein with an F-box motif that is very tightly linked to a gene for S-RNase in two species of cherry, Prunus cerasus and P. avium [J]. Plant Cell Physiol, 2003, 44: 764-769.
[12]	Cheng J H, Bai S L, Han Z H, et al. Cloning and expression qnalysis of the self-incompatibility 9-Haplotype specific F-box genes in cherry (Prunus Avium)[J]. Scientia Agricultura Sinica, 2006, 39 (5): 976-983.
[13]	Entani T, Iwano M, Shuba H, et al. Comparative analysis of the self -incompatibility(S-)locus region of Prunus mume: Identification of a pollen-expressed F-box gene with allelic diversity [J]. Genes Cells, 2003, 8: 203-213.
[14]	刘月霞,冯建荣,王大江,等.2个中亚杏品种自交不亲和SFB 基因的克隆及序列分析[J].果树学报,2013,30(4):551-557.
[15]	Xu J X, Gao Z H, Zhang Z. Identification of S-genotypes and novel S-RNase alleles in Japanese apricot cultivars native to China [J]. Scientia Horticulturae, 2010, 123: 459-463.
[16]	吴俊,谷超,张绍铃,等.11个中国杏品种S-RNase基因的检测与序列分析[J].南京农业大学学报,2008,1(4):37-42.
[17]	冯建荣,陈学森,吴燕.凯特与新世纪杏自交不亲和S-RNase 基因的检测及克隆[J].林业科学,2006,42(10):129-132.
[18]	Zhang L, Chen X, Chen X, et al. Identification of self-incompatibility (S-) genotypes of Chinese apricot cultivars [J]. Euphytica, 2008, 160: 241-248.
[19]	Yamane H, Ushijima K, Sassa H, et al. The use of the S haplotype-specific F-box protein gene, SFB, as a molecular marker for S-haplotypes and self-compatibility in Japanese apricot (Prunus mume) [J]. Theor Appl Genet, 2003, 107: 1357-1361.
[20]	张立杰.中国杏品种S基因型的鉴定.泰安:山东农业大学,2007.
[21]	姜新,曹晓艳,王大江,等.南疆杏品种自交不亲和S-RNase 基因型的鉴定[J].果树学报,2012,29(4):569-576.
[22]	李洪果.李、杏、杏李S基因型确定及其在种间杂交亲本选择中的应用.长沙:中南林业科技大学,2010.
[23]	Halász J, Hegedûs A, Hermán R', et al. New self-incompatibility alleles in apricot (Prunus armeniaca L.) revealed by stylar ribonuclease assay and & PCR analysis [J]. Euphytica, 2005,145: 57-66.
[24]	Xu J X, Gao Z H, Zhang Z. Identification of S-genotypes and novel S-RNase alleles in Japanese apricot cultivars native to China [J]. Scientia Horticulturae, 2010, 123: 459-463.
[25]	Banovic'B, Šurbanovski N, Konstantinovic'M, et al. Basic RNases of wild almond (Prunus webbii): Cloning and characterization of six new S-RNase and one''non-S RNase''genes [J]. Journal of Plant Physiology, 2009, 166: 395-402.
[26]	齐洁,顾曼如,束怀瑞.杏自交不亲和相关S-Rnase基因的克隆及表达[J].农业生物技术学报,2003,11(1):148-153.
[27]	Sutherland BG, Robbins T P, Tobutt K R. Primer samplifying a range of Prunus S-alleles [J]. Plant Breed, 2004, 123: 582-584.
[28]	Sapir G, Stern R A, Shafir S, et al. S-RNase based S-genotyping of Japanese plum (Prunus salicina Lindl.) and its implication on the assortment of cultivar-couples in the orchard [J]. Scientia Horticulturae, 2008, 118: 8-13.
[29]	Gu C, Wu J, Zhang S J, et al. Characterization of the S-RNase genomic DNA allele sequence in Prunus speciosa and P. pseudocerasus [J]. Scientia Horticulturae, 2012, 144: 93-101.
[30]	Yamane H, Tao R, Mori H, et al. Identification of a non-S RNase, a possible ancestral form of S-RNases, in Prunus [J]. Mol Genet Genomics, 2003, 269: 90-100.
[31]	Matsumoto S, Kitahara K. Discovery of a new self-incompatibility allele in apple [J]. HortScience, 2000, 35 (7): 1329-1332.
[32]	Cheng J, Hall Z, Xu X, et al. Isolation an d identification of the pollen expressed polymorphic F-box genes linked to the S-locus in apple (Malus×domestica) [J]. Sexual Plant Reproduction, 2006, 19: 175-183.
[33]	Broothaerts W. New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles [J]. Theoretical and Applied Genetics, 2003, 106 (4): 703-714.
[34]	Ishimizu T, Inoue K, Shimonaka M, et al. PCR-based method for identifying the S-genotypes of Japanese pear cultivars [J]. Theoretical and App lied Genetics, 1999, 98: 961-967..
[35]	梁文杰,谭晓风,张琳,等.8个中国梨品种基因型的分子鉴定[J].果树学报,2007,24(6):757-760.
[36]	Gu Q Q, Zhang Q L, Hu H J, et al. Identification of Self-Incompatibility Genotypes in Some Sand Pears (Pyrus pyrifolia Nakai) by PCR-RFLP Analysis[J]. Agricultural Sciences in China, 2009, 8(2): 154-160.
[37]	乌云塔娜,李洪果,杜红岩,等.中国李、杏S基因鉴定及其在远缘杂交中的应用(I)—中国杏地方品种9个新S基因的鉴定[J].中南林业科技大学学报,2011,31(4):90-96.
[38]	张绍铃,吴巨友,吴俊,等.蔷薇科果树自交不亲和性分子机制研究进展[J].南京农业大学学报,2012,35(5):53-63.
[39]	Yaegaki H, Shimada T, Moriguchi T, et al. Molecular characterization of S-RNase genes and S-genotypes in the Japanese apricot (Prunus mume Sieb. et Zucc.) [J]. Sex Plant Reprod, 2001,13 (5): 251-257.
[40]	Wünsch A, Hormaza J. Genetic and molecular analysis in Cristobalina sweet cherry, a spontaneous self-compatible mutant [J]. Sex Plant Reprod, 2004, 17(4): 203-210.
[41]	Ushijima K, Sassa H, Dandekar A M, et al. Structural and transcriptional analysis of the self-incompatibility locus of almond: identification of a pollen-expressed F-box gene with haplotype-specific polymorphism [J]. Plant Cell, 2003, 15(3): 771-781.

Transferability of S-RNase Genotype Identification Primers from Rosaceae to Kernel-apricot

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通讯作者: 陈斌, bchen63@163.com

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Transferability of S-RNase Genotype Identification Primers from Rosaceae to Kernel-apricot

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